Protein Info for Pf6N2E2_6011 in Pseudomonas fluorescens FW300-N2E2

Annotation: Hyphotheical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF13148: DUF3987" amino acids 46 to 392 (347 residues), 256.8 bits, see alignment E=1.8e-80

Best Hits

KEGG orthology group: None (inferred from 71% identity to pfo:Pfl01_0744)

Predicted SEED Role

"Hyphotheical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZTF1 at UniProt or InterPro

Protein Sequence (467 amino acids)

>Pf6N2E2_6011 Hyphotheical protein (Pseudomonas fluorescens FW300-N2E2)
MMLQSTWSLPPQPLLEANPTPLDYPVAALGDLLGPAVERLAEVMGVPQAMAAQSVLATSA
LATQGHANVHLDGRVYPLSLYLLTIAASGDRKTAVDKLALQPAREWERLQWQAYREKLSR
YRATLAQSQKQMATIDGHTDTPIQIEPEPVAPRLISSEPTIEALTKSLCLGLPSMGLFSD
EGGQFLGSSTMSRDNRLKAVTTLSSLWDGNPIDRSRSMAGESLRAYDRRLSLHLMLQPYL
AGQLLKDPLLNGQGIFARCLITWPQSLAGQRFYQPVDLTQDISLKRYSQRITDLLQRPWA
IGSDGALHPKALPLRSLARQTWINLHDTIEAQLGEFDELANVRPSASKAADNLLRIAGVF
AILEDSDLIEVTHIQRASSLMDYYLTEIQRLTEQEPINTQREEADRLLRWLQEKQWCRFT
VRDLLRNGPRFARKSSHHTLALLVELITHQWLGTDGHHFEVRHVSTQ