Protein Info for Pf6N2E2_5987 in Pseudomonas fluorescens FW300-N2E2

Annotation: OmpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14346: DUF4398" amino acids 28 to 106 (79 residues), 42.9 bits, see alignment E=5.8e-15 PF00691: OmpA" amino acids 157 to 252 (96 residues), 89 bits, see alignment E=2.2e-29

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4015)

Predicted SEED Role

"OmpA family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZT60 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Pf6N2E2_5987 OmpA family protein (Pseudomonas fluorescens FW300-N2E2)
MKHSHVLGGLVLAGLASLYGCAGQRSEAALDQASTDFQKVKEDANVLRAAPRDVIRAGES
LARADRLSSYWGSGEDVQHYAYLSQRYSAIAREHSNQVLNEERAAKLELERQRLQLALRE
SKLLSVQQQGKWLEEQIMAMATTQTDRGLVMTLGDVLFDTGEAELKNSANRVVLKIVQFL
QLNPKRVVRIEGYTDSTGGKQENLKLSRDRAQAVADVLVDLGVDEKRIQVEGYGDEYPVD
VNATERGRAQNRRVEIVFSDEKGQLGAAR