Protein Info for Pf6N2E2_5934 in Pseudomonas fluorescens FW300-N2E2
Annotation: FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to Y4174_PSEPF: UPF0434 protein Pfl01_4174 (Pfl01_4174) from Pseudomonas fluorescens (strain Pf0-1)
KEGG orthology group: K09791, hypothetical protein (inferred from 90% identity to pmk:MDS_1669)Predicted SEED Role
"FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A0C1X187 at UniProt or InterPro
Protein Sequence (61 amino acids)
>Pf6N2E2_5934 FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster (Pseudomonas fluorescens FW300-N2E2) MDTKLLDILACPVCKGPLKLSADKTELISKGAGLAYPIRDGIPVMLESEARTLTTDERLD K