Protein Info for Pf6N2E2_5919 in Pseudomonas fluorescens FW300-N2E2

Annotation: Flp pilus assembly protein TadD, contains TPR repeats

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details PF13181: TPR_8" amino acids 125 to 151 (27 residues), 13 bits, see alignment (E = 9.7e-06) PF14559: TPR_19" amino acids 130 to 187 (58 residues), 26.6 bits, see alignment E=6.4e-10

Best Hits

KEGG orthology group: None (inferred from 91% identity to pba:PSEBR_a4082)

Predicted SEED Role

"Flp pilus assembly protein TadD, contains TPR repeats"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZXY5 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Pf6N2E2_5919 Flp pilus assembly protein TadD, contains TPR repeats (Pseudomonas fluorescens FW300-N2E2)
MSRRLVCNAYDVQRFAKGYSMKTVIALAASLMLAGCASSGVVASRTTDCAKPGADQELAL
NMAEDMANEGRLYASLANLERLPEDLVQVRLRKARVLRLMGRNEAEPLYKSLLGTCLAAD
GEHGLGQLAVAKNDNAAATQYLERAAKMAPTEGKIRNDLGVVYLNQRRISEARFEFMTAM
ELQQSDTLAALNMVTLLIYQDNWKQAAELANMAKLSPQQVADAQARAEKIRGSATNTMTS
PANRPTEIVDASTGAVK