Protein Info for Pf6N2E2_5861 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00953885: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 170 to 183 (14 residues), see Phobius details amino acids 189 to 189 (1 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details PF04654: DUF599" amino acids 13 to 223 (211 residues), 234.1 bits, see alignment E=6e-74

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4134)

Predicted SEED Role

"FIG00953885: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161GU35 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Pf6N2E2_5861 FIG00953885: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MSFIQANLIHLLAAAWFIICWAGYTRYATWKARDTACLASVMHLYREDWMRRMLLRENRI
ADASVIGNLERNASFFASSTLIILAGILTVLGASDRAVSLLADIPLVQQASQGMAEVKLL
CLALVFVYAFFTFSWCMRQYNFAAVLIGSAPMIGERHVSEQERKAFALRAARVISMAANQ
FNFGLRSYYFGMTMLAWFVSPWLFMLMSAGVVFVLYQREFHSDVLDVMVYTPTEAPVSEV
GKEAA