Protein Info for Pf6N2E2_578 in Pseudomonas fluorescens FW300-N2E2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details PF05717: TnpB_IS66" amino acids 6 to 102 (97 residues), 91.1 bits, see alignment E=1.8e-30

Best Hits

KEGG orthology group: None (inferred from 89% identity to psb:Psyr_0746)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVF0 at UniProt or InterPro

Protein Sequence (111 amino acids)

>Pf6N2E2_578 Mobile element protein (Pseudomonas fluorescens FW300-N2E2)
MIRIDSIWLATEPMDMRAGTETALARVIAVFGAAQPHCAYLFPNHRATRMKVLVHDGFGI
WLAARRLNQGKFHWPGIRQDSEMELDTEQLQALVLGLPWQRAGSGGAITLL