Protein Info for Pf6N2E2_5772 in Pseudomonas fluorescens FW300-N2E2

Annotation: DUF1232 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 66 to 85 (20 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details PF06803: DUF1232" amino acids 72 to 106 (35 residues), 46.1 bits, see alignment 1.7e-16

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a4214)

Predicted SEED Role

"DUF1232 domain-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A2L2 at UniProt or InterPro

Protein Sequence (151 amino acids)

>Pf6N2E2_5772 DUF1232 domain-containing protein (Pseudomonas fluorescens FW300-N2E2)
MKAPWNFARFLPLAGRLLARGRLPTLLFAVASKGAREGGRLGKLKEDLHLLQALCLAYWR
GEYRAVSAKSMLSVVAGLMYFLSPLDAIPDILPMFGMFDDIAVLAWVMKTLDVELEAFRA
WRYRQSPEKLAQVERLPDTPEQLQLQGQKKT