Protein Info for Pf6N2E2_5713 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00956341: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details PF09842: DUF2069" amino acids 24 to 125 (102 residues), 93 bits, see alignment E=6e-31

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a4268)

Predicted SEED Role

"FIG00956341: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A407 at UniProt or InterPro

Protein Sequence (141 amino acids)

>Pf6N2E2_5713 FIG00956341: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
VAKKPKILPSIQWLEPRVRLARVLSLLCFFGLVGLLSAYYLLIADLHGARPWVILLIELV
PLLILAPGMLSGSARGHSWMCFVVNLYFIKGALAAYDPNRQLFGVLEMAASVAVFCSALL
YVRWRFQLNRRLAGEGDVSVA