Protein Info for Pf6N2E2_5691 in Pseudomonas fluorescens FW300-N2E2

Annotation: Flagellar basal-body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF17656: ChapFlgA_N" amino acids 54 to 126 (73 residues), 72.8 bits, see alignment E=3.6e-24 TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 117 to 252 (136 residues), 132.8 bits, see alignment E=4.1e-43 PF08666: SAF" amino acids 130 to 191 (62 residues), 28.4 bits, see alignment E=3.1e-10 PF13144: ChapFlgA" amino acids 130 to 252 (123 residues), 121.7 bits, see alignment E=2.9e-39

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 100% identity to pba:PSEBR_a4290)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A675 at UniProt or InterPro

Protein Sequence (254 amino acids)

>Pf6N2E2_5691 Flagellar basal-body P-ring formation protein FlgA (Pseudomonas fluorescens FW300-N2E2)
MNAQTTFSRRLTTHCRHWLGALLAVCLFTSGGPALAAVPVTLPDLLIGVTQGFLEFTVED
YLATSQTEGRYEIEVNQLDPRLRMPMCDKELTASLESPARPLGRVTVKVRCDSAAPWTVF
VPAQVRLFREIVTTTRPLKRAGIVEPQDVMLRERDISQITQGFLTSVDQAIGQKLVRPMV
ADQVVTLVHLEQAEVVRKGDQVVITARSGSLAVRMPGEALSNGGMREQIRVKNLNSQRVI
KAQVMAPGQVEVAM