Protein Info for Pf6N2E2_5669 in Pseudomonas fluorescens FW300-N2E2

Annotation: Succinylarginine dihydrolase (EC 3.5.3.23)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 PF04996: AstB" amino acids 3 to 446 (444 residues), 738.4 bits, see alignment E=1.4e-226 TIGR03241: succinylarginine dihydrolase" amino acids 3 to 446 (444 residues), 811.9 bits, see alignment E=8.3e-249

Best Hits

Swiss-Prot: 94% identical to ASTB_PSEPF: N-succinylarginine dihydrolase (astB) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K01484, succinylarginine dihydrolase [EC: 3.5.3.23] (inferred from 99% identity to pba:PSEBR_a4315)

MetaCyc: 58% identical to N-succinylarginine dihydrolase (Escherichia coli K-12 substr. MG1655)
N-succinylarginine dihydrolase. [EC: 3.5.3.23]

Predicted SEED Role

"Succinylarginine dihydrolase (EC 3.5.3.23)" in subsystem Arginine and Ornithine Degradation (EC 3.5.3.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.3.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A660 at UniProt or InterPro

Protein Sequence (448 amino acids)

>Pf6N2E2_5669 Succinylarginine dihydrolase (EC 3.5.3.23) (Pseudomonas fluorescens FW300-N2E2)
MKSYEVNFDGLVGPTHNYGGLSYGNVASQSNSQQSSNPKEAALQGLAKMKALMDMGFQQG
VLAPQERPDVAALRRLGFAGSDAQVIQQAAKEAMPLLVASCSASSMWVANAATVSPSADT
ADGRVHFTAANLNCKYHRSIEHPTTSRVLGAMFANQQHFAHHAALPAVAQFGDEGAANHT
RFCRAYGEAGVEFFVFGRSAFDTRYPAPQKYPARQTLEASQAVARLHGLREEGVVYAQQN
PSVIDQGVFHNDVIAVGNGEVLFYHEDAFLETDRMLAELSSKLAKVGGKFQSVCVPRSAV
TVDDAVRSYLFNSQLLSRPDGSMLLIVPEECRGNERVWQYLQGLTGTGGVIREVKVFDLK
QSMQNGGGPACLRLRVALNETELAAVNPGVIMTAPLYDSLTQWVERHYRDRMTENDLADP
QLLLECRGALDELTQILKLGSVYPFQIN