Protein Info for Pf6N2E2_5648 in Pseudomonas fluorescens FW300-N2E2

Annotation: Outer membrane protein romA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF13483: Lactamase_B_3" amino acids 80 to 287 (208 residues), 42.8 bits, see alignment E=5.7e-15 PF12706: Lactamase_B_2" amino acids 95 to 287 (193 residues), 155.1 bits, see alignment E=1.9e-49

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a4337)

Predicted SEED Role

"Outer membrane protein romA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161H9A6 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Pf6N2E2_5648 Outer membrane protein romA (Pseudomonas fluorescens FW300-N2E2)
MTIPSLSTDNPSAQNASRREQGKYRNHAFTPREGFGTTLRIIWNMIFHKPRTTRPSGAIE
VQPLSRDTLLAAPNNSVWRLGHSTVLLKLRDKFWLTDPVFSERASPVQWVGPKRFHQPPI
SLEELPPIEAVILSHDHYDHLDHQAILKLAAKTRHFLAPLGVGDTLIKWGIDASKVRQLD
WWQGTEVDGIEFIATPSQHFSGRGLFDSNGTLWASWVMIDAGTRIFFSGDTGYFDGFKRI
GEQYGPFDLTLMETGAYNVDWPHVHMQPEQTLQAHIDLKGRWLLPIHNGTFDLAMHAWYE
PFDRILALAWERNVSIATPQMGEAFTLTQPKRGRAWWLDVEPSAYQDQPDMA