Protein Info for Pf6N2E2_5549 in Pseudomonas fluorescens FW300-N2E2

Annotation: Copper resistance protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 44 to 70 (27 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details PF05425: CopD" amino acids 189 to 295 (107 residues), 93.4 bits, see alignment E=5.4e-31

Best Hits

Swiss-Prot: 62% identical to COPD_PSESF: Copper resistance protein D (copD) from Pseudomonas syringae pv. actinidiae

KEGG orthology group: K07245, putative copper resistance protein D (inferred from 92% identity to pba:PSEBR_a4429)

Predicted SEED Role

"Copper resistance protein D" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZPS6 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Pf6N2E2_5549 Copper resistance protein D (Pseudomonas fluorescens FW300-N2E2)
MSDSINIALRFALYLDLMLLFGLAAFGLYSLRGQERASGAQLPFTPLLVTTAVLGGLLSF
AAMACMAWAMSGVSDWVELWPHIEMMVLETDVGSSWTLRIAALLLAGVAATLNGRWPTLS
LWLVMLGGAVALATLAWAGHGAMDEGERRNWHFITDFLHLWAAGGWVGALAAFALLLRQT
EPQLAVLARTLTGFETAGAVIVVVISVTGVVNYLFIVGPNVEGLLDSTYGQLLALKLILF
AAMLVFAALNRFHLSPLLEQARQTGEHGVAVNALRRSMVLEFCVAVIILGLVAWLGTLSP
AME