Protein Info for Pf6N2E2_552 in Pseudomonas fluorescens FW300-N2E2

Annotation: Uncharacterized protein ImpF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 TIGR03357: type VI secretion system lysozyme-like protein" amino acids 8 to 134 (127 residues), 102.8 bits, see alignment E=5.5e-34 PF04965: GPW_gp25" amino acids 29 to 123 (95 residues), 59.3 bits, see alignment E=1.3e-20

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a3319)

Predicted SEED Role

"Uncharacterized protein ImpF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZRV8 at UniProt or InterPro

Protein Sequence (147 amino acids)

>Pf6N2E2_552 Uncharacterized protein ImpF (Pseudomonas fluorescens FW300-N2E2)
MAGFGLRPPLFERLASPADDTGRAFDRQALQDSVHAELSRLFNTRRGPRALTEPPSILDY
GIADWTALQQQRSDDRRQLTREIRQAITCFEPRLRLGEVEVCPVPGRPQQLCIRLLGELR
GDQHAWPVAFVIEHAGDGLEVRHERLD