Protein Info for Pf6N2E2_551 in Pseudomonas fluorescens FW300-N2E2

Annotation: Protein ImpG/VasA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 transmembrane" amino acids 546 to 566 (21 residues), see Phobius details PF05947: T6SS_TssF" amino acids 6 to 592 (587 residues), 607 bits, see alignment E=2.2e-186 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 9 to 594 (586 residues), 587.5 bits, see alignment E=2.1e-180

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 98% identity to pba:PSEBR_a3320)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZT87 at UniProt or InterPro

Protein Sequence (596 amino acids)

>Pf6N2E2_551 Protein ImpG/VasA (Pseudomonas fluorescens FW300-N2E2)
MSDSIDPQLLDYYQRELTWLRHAGSLFAERYPKVARRLELSPGECPDPHVERLLEGFALL
AARLQRRLDDDYAEFSDALLEQLYPLAMRPLPSCAIVQFEPDPSKGNLNEGYPLPRDTPL
FVTTDKGQSIHFRTTAAVHLWPVEISEALLLGSDETQALTGVVRARSALRLELRCLGESQ
WSTLGIDSLRVHLAASPIINAGLYDLLGAHAIEVLAGAPGSVPASLTGLPQIVGFANDQV
LLPDEDGVHPGMRLLAEYFAFPDKFGFFDLPLAGATSDSPSLYLYIVFDRPPTSRLPLQA
SDIALGCTPVINLFPRTSEPLRPDGTRSEYRLVADSHRENSVEIHSIRGMRAMSSQGVRK
VPAYYGSQHGSDQTCYWHARRVSGMSPNRLGTDLMVSLVDTQFDPLAETRDYSLTAELLC
TNRHLAQSLPAGTPLGFERPGPVAWARLRNPPSPQSLPRLDGESRWRLVSQLTLNHLSLV
EGPQALDALSEILQLHNLRDEASAHRQIEGVSGLSCDRVIAHVGEDAWRGWRNGLEVRLQ
LDPQHFVGSSAVLFSGVLAQFFSLYATANRFVRTVLVQSDKEVKTWQPQAGKPLVL