Protein Info for Pf6N2E2_5502 in Pseudomonas fluorescens FW300-N2E2

Annotation: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 transmembrane" amino acids 33 to 65 (33 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details PF13559: DUF4129" amino acids 434 to 505 (72 residues), 28.3 bits, see alignment E=7.9e-11

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a4471)

Predicted SEED Role

"5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3T8 at UniProt or InterPro

Protein Sequence (514 amino acids)

>Pf6N2E2_5502 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases (Pseudomonas fluorescens FW300-N2E2)
MRLSDATVVIRPRSTWEAMDLGVLMSQQHRRLLMTSWAIITLPVYLLLTLLLWDSPSLVV
MLFWWLKPAFDRLPLYILSKALFGETPTLRQALRQWPALLKPQLLASLTWRRLSLSRSFL
MPVVQLEGLSGEARTQRLRVLMQRNRGAAQWLTIIGVHLETALWFGLMALFYLFVPQQVE
LQWDWETLVSAAEHDWLWFEHLVNFLYPLLLILWEPVYVACGFSLYLNRRTILEAWDIEL
VFRRLRQRLSGVAPVLMLLALMLLPPTPPAFAAEDSDAPDSPRLLNQPLTSEASRDGIKA
ILDAPPFKTPETVIRYRFGEETAESPEAETEAKPSWLKDLFKWLGSQRFDIAAALIQVVL
WACLMAAIAWLAWRYRERLKALANRRPTQRLPVERAVPARMFGLDIREESLPADVATRVE
QLWATQPREALGLLYRALLSRLHHDFKIPLKPADTEGQVLERVEQLKQDNLLGFSKNLTL
HWQNIAYGHRPPPTHLQQELCDGWRELFGPGASR