Protein Info for Pf6N2E2_549 in Pseudomonas fluorescens FW300-N2E2

Annotation: ClpB protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 10 to 847 (838 residues), 1125.5 bits, see alignment E=0 PF02861: Clp_N" amino acids 21 to 72 (52 residues), 40 bits, see alignment 2e-13 PF00004: AAA" amino acids 218 to 348 (131 residues), 38.3 bits, see alignment E=9.8e-13 amino acids 615 to 722 (108 residues), 33.2 bits, see alignment E=3.6e-11 PF17871: AAA_lid_9" amino acids 360 to 452 (93 residues), 107.7 bits, see alignment E=1.5e-34 PF07724: AAA_2" amino acids 609 to 773 (165 residues), 173.4 bits, see alignment E=2.4e-54 PF07728: AAA_5" amino acids 614 to 732 (119 residues), 39.8 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 99% identity to pba:PSEBR_a3322)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVJ2 at UniProt or InterPro

Protein Sequence (847 amino acids)

>Pf6N2E2_549 ClpB protein (Pseudomonas fluorescens FW300-N2E2)
MELASLIGRLNPDNRRALERAAQRCMQRSHHYVEIEHLLLELLDIEGGDFACLLPRFGLE
RDAVATETNKALDLFKSGSTRTPALSAQTIGLLEDAVVQASVLGLDSIRSGLLLLALLDR
DERRSLLLNSASSLLRIPRDALRAHLLEWTESSREHVGGVRPAKPGEPPQKQDPVLDQYT
QDLTADARAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAA
GDVPPSLQEVTLRVLDLGLLQAGAGVKGEFEQRLKGVIDAVRSAEKPIILFIDEAHTLIG
AGGAEGGSDAANLLKPALARGELRTLAATTWLEYKKYFEKDPALARRFQLVQVEEPDELT
AVEMLRGVASKLEQHHGVQVLDAAIHEAVKLSHRYISGRQLPDKAISVLDTACARVALGQ
HDVPPPLESLRHRQNSLKDEVERLRREQATGLDHRERITLLEAESTSNVQAIRELETRWG
EEREAVRELLDTRRELLTLSERADSEKADTEIDNRIDHLAAELLRLEAGLDAIRQDDPLV
PEQVDSKTVAAVIAGWTGIPVGKMLADEAHAVRTLGQRMGQRVMGQSTALNTIAQRLQAY
RAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERNLISINLSEYQEAHTVSQLK
GAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVV
DFKNTVMLATSNVGAELLLDTPTAQLGSDAFNEALHKVLLQAFRPAFLARMTVVAYRPLD
EATLEGIVLAKLEKLRGRYKAATGKQFEFDAGIVKAVLAKCSAAGARDVENVLMTQVTGK
LAEWVLE