Protein Info for Pf6N2E2_548 in Pseudomonas fluorescens FW300-N2E2

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 669 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR03361: type VI secretion system Vgr family protein" amino acids 16 to 505 (490 residues), 594.2 bits, see alignment E=2e-182 TIGR01646: Rhs element Vgr protein" amino acids 23 to 487 (465 residues), 412.7 bits, see alignment E=2.5e-127 PF05954: Phage_GPD" amino acids 30 to 323 (294 residues), 285.1 bits, see alignment E=9.8e-89 PF04717: Phage_base_V" amino acids 369 to 436 (68 residues), 57.9 bits, see alignment E=1.6e-19 PF06715: Gp5_C" amino acids 561 to 584 (24 residues), 25.8 bits, see alignment (E = 1.2e-09)

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfo:Pfl01_3415)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZT37 at UniProt or InterPro

Protein Sequence (669 amino acids)

>Pf6N2E2_548 VgrG protein (Pseudomonas fluorescens FW300-N2E2)
MPRSTDSNTTLSLTATSLSALYPESLSGEERLNALGSHMLNGINDGASLDLTTAVASHVT
TTLHKDALLRPLDWLVAEIRQLPADATAERYQLLLRPWLWWLSLASNNRVFQNLATSDIV
TTIFKAHGFTDFQLKLTGSYTPREYCVQYSETDLAFVSRLLEEEGIFWFFTHEEGTHTLV
LADSNDAFAPIPNGPTVNYLGQRIGERELHGIRSGQVCLQAVAGVYQATDYEFTTPTTSL
YSQAEAVAGPSSVYEHPGGYTAKAQGDALTKQRVDGLRSQEQRFVGESDCRWLVPGYWFT
LAGHEDTTLNIDWVVTSVSHEASHDSYRNRFEAIPKATVYRPPRLTPKPRMYTQTALVVG
KAGEEIWTDEYGRIKLQFPWDRTGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVT
FIDGDPDRPLVTGCVYNGDNALPYALPANQTQSGIKTQSSKGGGGFNELRFEDKKDAEEV
FLQAQKDFNINVLNDTTATVGHDETLTVQNARTRTVKDGDETVTLEKGKRSVTIQTGSDS
LDVKDTRTVTVGSDQTHSTGGNYEHKVTGNYSLTVDGNLTIKVSGTLTLQSGGSFAIKSG
ADLAVQASTSISQKAGTALSNQAGTSLENKAGTTLTNDAGISLVNKAAAEQTVDGGGMLT
IKGGLVKVN