Protein Info for Pf6N2E2_5445 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative preQ0 transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 6 to 37 (32 residues), see Phobius details amino acids 46 to 63 (18 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a4530)

Predicted SEED Role

"Putative preQ0 transporter" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A5S6 at UniProt or InterPro

Protein Sequence (155 amino acids)

>Pf6N2E2_5445 Putative preQ0 transporter (Pseudomonas fluorescens FW300-N2E2)
MLFLIAYIASVVLINFAFSAAPHLDIIWSAWGGLVFILRDMVQTRFGHGAIAAMLVALVL
SYVTSDPTIALASATAFAVSECIDWLVFTITKRPLHDRLWISSALSIPLDTFIFFGLIDA
LTPAVVITALASKFAGVTAVWLIMAWRLRKQTVAT