Protein Info for Pf6N2E2_5409 in Pseudomonas fluorescens FW300-N2E2

Annotation: Cyanate transport protein CynX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 242 to 264 (23 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details amino acids 365 to 387 (23 residues), see Phobius details amino acids 398 to 423 (26 residues), see Phobius details TIGR00896: cyanate transporter" amino acids 47 to 397 (351 residues), 467.6 bits, see alignment E=1.3e-144 PF07690: MFS_1" amino acids 63 to 379 (317 residues), 78.1 bits, see alignment E=3.1e-26

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 98% identity to pba:PSEBR_a4570)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1U7 at UniProt or InterPro

Protein Sequence (434 amino acids)

>Pf6N2E2_5409 Cyanate transport protein CynX (Pseudomonas fluorescens FW300-N2E2)
MSRDLLDPATSTTPKRAAELEELLIDAEADDEQAQQRPPLVRRPWLLLLGLILVALNLRP
ALSSMAPLLSEVSRSLDLSAAQAGLLTTLPVLCLGLFAPLAPVLARRFGAERVVLGILLT
LAGGIVLRSAFGQVGLFVGSILAGASIGVIGVLLPGIVKRDFAKQAGTMTGVYTMALCLG
AAMAAGATVPLSEQLGHSWALGLGFWVVPALLASVFWLPQVGEKHGAHQVAYRVRGLLRD
PLAWQVTLYMGLQSSLAYIVFGWLPSILIGRGLTPTQAGLVLSGSVIVQLISSLAAPWLA
TRGKDQRLAIVIVMLMVLGGLFGSLYAPLDGLWGWAILLGLGQGGSFSLALTLIVLRSRD
AHVAANLSGMAQGFGYTLASLGPFAVGVVHDLTGGWNALGWIFGLVGLGAIIAGIGAGRA
LYVGVSSERVTDLR