Protein Info for Pf6N2E2_5385 in Pseudomonas fluorescens FW300-N2E2

Annotation: Alginate biosynthesis protein AlgK precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF08238: Sel1" amino acids 305 to 335 (31 residues), 13.6 bits, see alignment (E = 4.3e-06) amino acids 341 to 374 (34 residues), 11.1 bits, see alignment 2.8e-05

Best Hits

Swiss-Prot: 73% identical to ALGK_PSESM: Alginate biosynthesis protein AlgK (algK) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: K07126, (no description) (inferred from 98% identity to pba:PSEBR_a4593)

Predicted SEED Role

"Alginate biosynthesis protein AlgK precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1U1 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Pf6N2E2_5385 Alginate biosynthesis protein AlgK precursor (Pseudomonas fluorescens FW300-N2E2)
MPQTRSHMGTLCALALAVSLAGCAGLPDQRLANEALKRGDTALAQQNYQQLADLGYSEAQ
VGLADIQVDSRDPEQMRKAEATYRAAADISPRAQARLGRLLVAKPGSTEAEKHEAEGLLK
KAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWRSAGYPEAGLAQILLYRTQGTYD
QHLDEVEKVCKAALATTDICYVELATVYQKRGQPEQQAALLKQMQDGHARGVVSAQRVDS
VARVLADASLGKTDEKTAQSLLEGIAPGYPAAWVSLAQLLYDFPELGDVDKMMQYLENGR
AADQPRAELLLGKLYYEGKWVPADAKAAEAHFQNAVGREVAADYYLGQIYRRGYLGQVYS
QKALDHLLKAARNGQNSADFAIAQLFSQGKGTKPNPVNAYVFSQLAKAQNTPQAIELAQT
LEAQLPPQQLAQAQRLLQQEQAIRGAMSPDTLELQALKEDDGEEPL