Protein Info for Pf6N2E2_5280 in Pseudomonas fluorescens FW300-N2E2
Annotation: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 87% identical to Y3430_PSEAE: Putative aldolase class 2 protein PA3430 (PA3430) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4705)Predicted SEED Role
"Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A160A1L1 at UniProt or InterPro
Protein Sequence (260 amino acids)
>Pf6N2E2_5280 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases (Pseudomonas fluorescens FW300-N2E2) VSVAPVQTTLSIKDQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTEDFLIN PFGMMFHEITASSLVKVDQAGNKLMDSPYEINPAGYTIHSAVHEVRHDVACVLHTHTAAG VAVSAQKQGVLPISQQSLFVLSSLAYHAYEGVALNHEEKARLQADLGESNFLMLHNHGLL TCGGTIADTFLMMFTFQRACDIQVLAQSGGAELIAIEPQILAGARAMIAGVTKSAQGMGG ALAWPALLRKLDQQDAGYRS