Protein Info for Pf6N2E2_5230 in Pseudomonas fluorescens FW300-N2E2

Annotation: COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF04463: 2-thiour_desulf" amino acids 11 to 152 (142 residues), 131.8 bits, see alignment E=1.9e-42 PF08349: DUF1722" amino acids 195 to 311 (117 residues), 148.8 bits, see alignment E=7.9e-48

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a4749)

Predicted SEED Role

"COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3E2 at UniProt or InterPro

Protein Sequence (320 amino acids)

>Pf6N2E2_5230 COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA (Pseudomonas fluorescens FW300-N2E2)
MSSTAIAKPRIAISACLMGAEVRFNGGHKQSQLCSRTLVDYFDFVPVCPEVAIGLGIPRE
PIRLVGDPKHPEALGTVNRELNATRPLADYAKQMAGELDDICGYIFMQKSPSCGLERVKV
YDHNGVTQDGGGRGIYAQAFCERHPDLPVEEDGRLNDPVLRENFLTRVFAYAAWQPLRRD
GLTRRDLIEFHSRYKYLLMAHNPVQYKALGNLLGNMGKADPNELGPRYFSALMAALKKCA
TRRTHTNVLQHLSGYLKRAIDADDKQEVQHLIGQYRLGIVPLVVPLTLLKHHLRQHPDPY
LTQQVYLQPHPENLSLRNAI