Protein Info for Pf6N2E2_523 in Pseudomonas fluorescens FW300-N2E2

Annotation: Inositol transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 PF00005: ABC_tran" amino acids 42 to 192 (151 residues), 115.7 bits, see alignment E=2.5e-37 amino acids 292 to 445 (154 residues), 83.4 bits, see alignment E=2.4e-27

Best Hits

Swiss-Prot: 87% identical to RGMG_PSEF5: Putative ribose/galactose/methyl galactoside import ATP-binding protein (PFL_2594) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K02056, simple sugar transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 99% identity to pba:PSEBR_a3347)

Predicted SEED Role

"Inositol transport system ATP-binding protein" in subsystem Inositol catabolism

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZRE1 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Pf6N2E2_523 Inositol transport system ATP-binding protein (Pseudomonas fluorescens FW300-N2E2)
MFASATASSAPAMTFRPDVIPDEPYLLEVVNVSKGFPGVVALSDVQLRVRPGSVLALMGE
NGAGKSTLMKIIAGIYQPDAGELRLRGKPVTFDTPLAALQAGIAMIHQELNLMPHMSIAE
NIWIGREQLNGLHMVDHGEMHRCTARLLERLRIKLDPEEQVGNLSIAERQMVEIAKAVSY
DSDILIMDEPTSAITETEVAHLFSIIADLKSQGKGIIYITHKMNEVFAIADEVAVFRDGA
YIGLQRADSMDGDSLISMMVGRELSQLFPVREQPIGDLVLSVRDLSLDGIFKGVSFDLHA
GEILGIAGLMGSGRTNVAEAIFGVTPSTGGEILLDGQPVRISDPHMAIEKGFALLTEDRK
LSGLFPCLSVLENMEMAVLPHYVGNGFIQQKALRALCEDMCKKLRVKTPSLEQCIDTLSG
GNQQKALLARWLMTNPRILILDEPTRGIDVGAKAEIYRLISYLASEGMAVIMISSELPEV
LGMSDRVMVMHEGDLMGTLNRGEATQERVMQLASGLS