Protein Info for Pf6N2E2_5229 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulator, MerR family, associated with photolyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF13411: MerR_1" amino acids 27 to 93 (67 residues), 57.9 bits, see alignment E=1.4e-19 PF00376: MerR" amino acids 28 to 64 (37 residues), 43.8 bits, see alignment 2.8e-15 PF02607: B12-binding_2" amino acids 113 to 181 (69 residues), 26.2 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a4750)

Predicted SEED Role

"Transcriptional regulator, MerR family, associated with photolyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A5C6 at UniProt or InterPro

Protein Sequence (315 amino acids)

>Pf6N2E2_5229 Transcriptional regulator, MerR family, associated with photolyase (Pseudomonas fluorescens FW300-N2E2)
MKNEPDSSASEDLGADFAKALAQGWLPIREVARQTGVNAVTLRAWERRYGLIVPHRTPKG
HRLFNADHVQRILSILTWIDRGVAVSKIKPLLDTPQPPTEPTQVPENDWQRQRHALVLAV
TQLAERQIDDLVNQAMALYPPWTVCEQLLLPLLAELHLRWQGQFGAQLERVFLYSWLRSK
FGSRIYHNNRQLRGAPLLLVNHSDSPQEPHLWLTAWLASSADCPVEVFDCPLPAGELALA
VERLKARGVLLYSSHALNLSQLPRLLGGIDCPIVIAGPAASIHQARLSTGVSMIDVSWAE
DPLSAHRELSRRELL