Protein Info for Pf6N2E2_5212 in Pseudomonas fluorescens FW300-N2E2

Annotation: GTP-binding and nucleic acid-binding protein YchF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 PF06071: YchF-GTPase_C" amino acids 98 to 181 (84 residues), 140.5 bits, see alignment E=7.6e-46

Best Hits

Predicted SEED Role

"GTP-binding and nucleic acid-binding protein YchF" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>Pf6N2E2_5212 GTP-binding and nucleic acid-binding protein YchF (Pseudomonas fluorescens FW300-N2E2)
MGADEKQIIRGFHLLTTKPVMYIANVAEDGFENNPLLDVVKAIAEEEGAMVVPVCNKIEA
EIAELEDGEEKDMFLEALGLEEPGLNRVIRAGYEMLNLQTYFTAGVKEVRAWTVRVGATA
PQAAAVIHTDFEKGFIRAEVIAYDDFIQYKGEAGAKEAGKWRLEGKEYIVKDGDVMHFRF
NV