Protein Info for Pf6N2E2_5186 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00954491: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 PF28010: MksB" amino acids 34 to 443 (410 residues), 870.2 bits, see alignment E=8.6e-267

Best Hits

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a4783)

Predicted SEED Role

"FIG00954491: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161H5S9 at UniProt or InterPro

Protein Sequence (459 amino acids)

>Pf6N2E2_5186 FIG00954491: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
LIDSERQSVQGVNRNRLDAVQSPLLIANPTAIAMIEPKRVLRALAEHWALLEPLCEHFDQ
GTLSLNELRSQLAAQQLDSTPQDITSLLDVWIRLDILVPVAKSPNRFELNAQIHDFLAYL
RREHRLGLCLEIEAYLRHLERLAGYIQDAFDIRDGNDLARQLRLLDMRVRDVLKKLANDE
QALVAVAERAKTSDRQIPLRQRYAEVLATWDEYVEPMIQLVNADGAFEQGVRKVENVLLR
MLTEQQRLGHLVDDDMLLRTHARILEMQTSAQLTLRHARELLLPLREEARRHNAVTRGAA
LALAAIRRKGIDAVPQAAMPLFTRPQSTFLGSASQVEAYVYALARFEPKPARFPKSHKTH
KGGEAPRAPRTVREMVERCEDALPMPDLMTWLLEQEPDGATDELLYWFSRLSREKRFKRE
RLERRDYHTHEHQVSLRSFALLSAGDTAAEDSASIPHAS