Protein Info for Pf6N2E2_5091 in Pseudomonas fluorescens FW300-N2E2

Annotation: putative outermembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 617 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF13387: DUF4105" amino acids 118 to 290 (173 residues), 190.4 bits, see alignment E=1.1e-60

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4874)

Predicted SEED Role

"putative outermembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A4V0 at UniProt or InterPro

Protein Sequence (617 amino acids)

>Pf6N2E2_5091 putative outermembrane protein (Pseudomonas fluorescens FW300-N2E2)
MLKRLAWLALCVCAPLSAAPHVDPQRLQQLANDRFWISLGHYETAKLGGWRSYISDKKFF
LAPDGNEHPERELSATLKALYGPASAGQQHAQCVYPARTRWLKAQLNLTDLPAVDCSDFN
QWFKDVSPHSAVMIFPAAYLNSPSSMFGHTLLRIDQADVQSDKTALLSYAINFGAYIEGS
DNSILYAWKGLMGGYPGLFALVPYQEKLSEYRSLENRDLWEYRLNLSQAETERMVEHVWE
LKQIQFDYFFFDENCSYRLLELLQVARPSLRLTEQFPLTAIPTDTVKAVKEAGLVESIQY
RPSRERELLSRAEPLSDEEQQWVLKASADQQQLQAPGFKALPRERQALIIDAAYRLERYR
ANGQERDPQRAQRSFELLRAINQNPAPELDIPQPGLPEDGHQSRTWQAGLGTRGDRAFGE
YGLRMAYHDLNDNAESFPLGAQIEILQLKLRQYEGNDWQVQQLDLATIRSLTPRNELLQP
LSWQVTGGLERVPGKHDDETLVSHVNGGAGGTWALGEDVLGFALGTVRVEHNNDFAQFIA
PAAGFNSGVLWKNPLGNLSLEAKGDYFVNGEVRRSLSLNQQWELSRNLGLRLSAQREFSQ
LASPENEVMLEVKWYHY