Protein Info for Pf6N2E2_5007 in Pseudomonas fluorescens FW300-N2E2

Annotation: Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 68 to 364 (297 residues), 397.2 bits, see alignment E=2.3e-123 PF13406: SLT_2" amino acids 68 to 360 (293 residues), 387.9 bits, see alignment E=2.9e-120 PF01471: PG_binding_1" amino acids 382 to 437 (56 residues), 53 bits, see alignment 3.3e-18

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a4955)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A2S5 at UniProt or InterPro

Protein Sequence (440 amino acids)

>Pf6N2E2_5007 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) (Pseudomonas fluorescens FW300-N2E2)
MPFCLSHRWPLRQMIIAASVALLVACAEKPTAADAQPLQTAPAVTAPAIVPPLVPTGEDL
AIAPTQTFAQWQAGFRKEALAAGIRGDLFDRAFVGVSPDMSVIKADRSQPEFTRPVWEYL
DGALSPLRVNKGKSLIQQNAQVLQSIEQRYGVDREALVAVWGMESNFGQFQGSKSVINSL
ATLAYEGRRPGFAHAQLIAALQILQQGDITPEKMLGSWAGAMGQTQFIPTTYNTHAVDFD
GDGRRDIWGSSTDALASTAHYLQSSGWQRGQPWGFEVDLPEGFDYTLADGTIRKPVAEWE
RLGVSEYGGLPITPDDKQLSASLLLPAGHRGPAFLIFDNFRAILKYNNSSSYALAVGLLS
KRFTDGGLVYGQWPKEDLPLSRSERIELQTLLSKHNYDAGNPDGIIGANTRKAIRSAQQS
FGWPADGYPTQQLLEALRSR