Protein Info for Pf6N2E2_5 in Pseudomonas fluorescens FW300-N2E2

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2343 PF00668: Condensation" amino acids 2 to 447 (446 residues), 250.6 bits, see alignment E=6.8e-78 amino acids 467 to 902 (436 residues), 289.1 bits, see alignment E=1.4e-89 amino acids 1527 to 1963 (437 residues), 358.2 bits, see alignment E=1.6e-110 TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 304 to 460 (157 residues), 163.6 bits, see alignment 3.2e-52 PF00501: AMP-binding" amino acids 925 to 1273 (349 residues), 304.5 bits, see alignment E=2.5e-94 TIGR01733: amino acid adenylation domain" amino acids 945 to 1346 (402 residues), 448.8 bits, see alignment E=1.6e-138 PF13193: AMP-binding_C" amino acids 1330 to 1410 (81 residues), 35.3 bits, see alignment (E = 4.4e-12) PF00550: PP-binding" amino acids 1437 to 1500 (64 residues), 42.8 bits, see alignment (E = 1.3e-14) PF02668: TauD" amino acids 2030 to 2312 (283 residues), 167.2 bits, see alignment E=1.8e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2343 amino acids)

>Pf6N2E2_5 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules (Pseudomonas fluorescens FW300-N2E2)
VLLPFQQLFFEQDMAEPHHWNQSVLLKGLRPIHGGHLEQALQALVIHHDALRLAFKCENG
SWTAHHQTLAEQQAAWQRSPLLWTAEVADAPALERLAEQAQRSLALESGELLRGVLANLA
DGSQRLLLVIHHLVVDGVSWRILLEDLQQVYQQLQAGQPLKLPAKTSATQAWAQRLKLHA
DSAALQVQMAYWQAQLEGARHDLPCDRPQGELRRCDGMQVQTRLDKDQTRRLLQQAPAAY
RTQVNDLLLTALARVIGRWTTDGSTLIQLEGHGREALFDDVDLSRSVGWFTSLFPVRLTP
AATAGESIKAIKEQLRAIPDKGLGFGVLRYLGDEQTRRTLEALPKPRITFNYLGQFDSGF
AEEADGLFSPASEAAGEPQSPLAPLDNWLTLNGSVYAGELSIDWTFSAQMFDASTIQALA
VDYGQELQALIEHCCQAQHQGFTPSDFPLAGLTQAQLDALALAPRQVEDIYPLSPMQQGM
LFHTLLEQQAGNYINQLRVDVEGLDVERFRQAWQAAMDAHDVLRSSFVWEGEFKRALQVV
HKRLDVAFVSHDWRARTDLSQDLEALAWAQRQGFELDAAPLLRLVVARVAEDRYHLIYTS
HHILMDGWSNSQLLGEVLQRYSGQVLARPSGRYRDYIEWLSAQDPRANEQFWQAQLAELD
EPTLLAGAFARDNRTDARHGHGEHEQLLDAQVTARLQRFAREQKVTVNTLVQAAWQLLLQ
RCTGHSTVAFGATVAGRPAQIPGVEQQIGLFINTLPVIGQPRAEQSVGQWLQEVQGRNLS
LREHEHTPLFDIQRWAGQGGAALFDTLLVFENYPVAQALQEGAPATLRFGEVANHEQTNY
PLTLAVNLGETLSLLLSYSHDSFTPADVSRIGGHLRHLLEQLTLGGERPVGQLALLDAEQ
QQVQQGWNATAMDYPLDCSVHRLIEAQVAKTPDACALVFASQRLSYADLNAQANRLAHVL
IEHGVGPDVLVGIAVERSVEMVVGLLAILKAGGAYVPLDPEYPQDRLAYMFDDSGIGLLL
TQHHLLERLPVPSGLRSLVLDQPGDWLAGRSDSNPAVVVDAENLAYVIYTSGSTGKPKGA
GNRHSALANRLFWMQDAYGLEASDRVLQKTPFSFDVSVWEFFWPLLTGSTLVMAPPGAHR
DPAQMIELISAQQITTLHFVPSMLQVFMQDPAVGRCQSLKRIICSGEALPVDAQLQVFAK
LPAAGLYNLYGPTEAAIDVTHWTCVDEGRDAVPIGQPIANLSTFILDPDLSPLPVGVTGE
LYLGGEGLARGYHRRPALTAERFVTSPFGDGARLYRTGDLARYRADGVIEYAGRLDHQVK
IRGLRIELGEIEARLAEHAEVRDSVVIAQDGTLLVGYVVPQSSALLNAEASIGLAFEQAL
KTHLGQHLPDYMVPQHWVWLERMPVSPNGKLERKALPRFDANQSQQGFVPPEGELEQRIA
CIWQEVLEVEQIGRNDHFFERGGHSLLATQAVSRLRKLTDYPLSLRDLFNHPQLKALAAL
MAGSADGAVRAGDSSGIRLKAHGPRRSAPLSLVQRRLWIAEQLSGGTSAYGMPLALRLSG
ELSVEHLLSSFAEVVRRHDVLRTAYTQDDEGDPLALIADEIEGDFPVIDLSGLSPSAQQE
QVARATLENARTPIDLQQAPLWRGRILHLGPTEHVLLYAMHHIISDGWSMGLLINELVQV
YEASLNGQPMPLPPLDVQYYDFALWQQALEDQGVLARQADYWKHRLSGYDGRLSLPLENP
RGLTASYDGDALQFHLSPGLTAALRRLSSEAGVTLYSTLLASFQVLLHRVCAAQDIVVGA
DVAGREQPELERLIGFFVNVLPLRSRFDAELTFAAFLAHTQDNLLGALEHQDLPFDQIVE
ASGVPRHKGMNPLLQVLFVMNNVPVRSRTVAGLNVEALPALETHSKFDMALFVDEEEGQL
RGNWQFATTLFGHERIQHLIQAWTALLEQIVADQDIQLGAIRMPVNHSAAAARPATVPGP
KADKLGKFLKRSATPVARPRPTRVRESLVAAPQRFPLMLEPGEPHLDVIEWIQQNRAFIE
QKLAEHAGILFRGFQLDGIQGFEAFAEAIQPGLYGQYGDLPKKEGGKNTYRSTPYPERKM
ILFHNESSHQDRWPRKQMFYCEQAAPVGGATPVVDCRLMYEKLPADLREKFEDKGLLYVR
TFTDKLDVSWQHFFKTEDRGEVEARCRAGGIQWRWLDNDELQTRTPGPAIITHPITGEKS
FFNQVQLHHIYWLEPDVREDLLSMFGLERMPRQVYYGDGTPIEDEVMARIGELYEACAVR
FDWQKGDVILLDNMLVAHARDPFEGPRKIVVAMGDMYDHSSLEHRPAAGQTTQGALNTEE
SGA