Protein Info for Pf6N2E2_4917 in Pseudomonas fluorescens FW300-N2E2

Annotation: Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF09619: YscW" amino acids 73 to 140 (68 residues), 24.4 bits, see alignment E=1.6e-09

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a5042)

Predicted SEED Role

"Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A2R9 at UniProt or InterPro

Protein Sequence (163 amino acids)

>Pf6N2E2_4917 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) (Pseudomonas fluorescens FW300-N2E2)
MEFTLLEPHMPLRSLVLLSLFSLLMACSSDAPKPAAPAPAPAPKQAQEKARQAAELGPLP
AYQRELSGTLQGVPAGAEVELALLVIDDKDRPQQLLASSSLIGTNQALPFRLRFNPDAFP
LGARVELRGRASQSGQLILHLPEQRISQPTTQALGALQFVKAP