Protein Info for Pf6N2E2_4911 in Pseudomonas fluorescens FW300-N2E2

Annotation: ABC-type antimicrobial peptide transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 284 to 308 (25 residues), see Phobius details amino acids 328 to 358 (31 residues), see Phobius details amino acids 380 to 399 (20 residues), see Phobius details PF12704: MacB_PCD" amino acids 12 to 202 (191 residues), 54.4 bits, see alignment E=2.1e-18 PF02687: FtsX" amino acids 287 to 405 (119 residues), 69.2 bits, see alignment E=3.1e-23

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 99% identity to pba:PSEBR_a5048)

Predicted SEED Role

"ABC-type antimicrobial peptide transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161GLK6 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Pf6N2E2_4911 ABC-type antimicrobial peptide transport system, permease component (Pseudomonas fluorescens FW300-N2E2)
MASLANRRFTAILTAFAIALSVCLLLAVERVRTEARASFASTISGTDLIVGARSGSVNLL
LYSVFRIGNATNNIRWDSFEHFASNPKVKWAIPMSLGDSHRGYRVMGTTEAYFEHYQYGR
QQHLELADGRAFATDPFEVVLGAEVAEALHYKLGDKLVLAHGVAAISLVKHDDKPFTVVG
ILKRTGTPVDRTLHISLGGMEAIHIDWKNGVPAQGNGRISADQARNMDLTPQAITAFMLG
LNNKISTFALQREINEFRGEPLLAILPGVALQELWSLMGTAEKALFVISLFVVLTGLIGM
LTAILTSLNERRREMAILRSVGARPWHIATLLVLEAFALALAGVIAGLALLYIGIAAAQG
YVQSAYGLYLPLSWPSEYEWTLLAGILVAALLMGSVPAWRAYRQSLADGLSIRL