Protein Info for Pf6N2E2_4905 in Pseudomonas fluorescens FW300-N2E2

Annotation: Lhr-like helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1427 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00270: DEAD" amino acids 20 to 205 (186 residues), 97.7 bits, see alignment E=1.3e-31 PF04851: ResIII" amino acids 31 to 204 (174 residues), 33.5 bits, see alignment E=7.8e-12 PF00271: Helicase_C" amino acids 259 to 360 (102 residues), 65.7 bits, see alignment 8.6e-22 PF08494: DEAD_assoc" amino acids 625 to 827 (203 residues), 163.3 bits, see alignment E=1.3e-51

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A4P0 at UniProt or InterPro

Protein Sequence (1427 amino acids)

>Pf6N2E2_4905 Lhr-like helicases (Pseudomonas fluorescens FW300-N2E2)
MAGFHPAVRAWFSQTFPAVTAAQAQAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDDLVH
RGLEQGGLPDQTLVVYVSPLKALSNDIQINLQNPLAGITEQLRRMDLPPLHITTAVRTGD
TPQKERSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHL
ALSLERLQALCAEPLMRIGLSATQKPIEAVSRFLVGEGRSCEIVDIGHARPRDLDIEVPP
VPLSAVMANDVWELVYNRLAELAREHRTTLVFVNTRRLAERLSRHLSERLGKDAVAAHHG
SLAKEFRLDAEQRLKRGELKVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVGRSG
HQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPKAPLDVLAQQIVAEVSCQEW
PEQALLETFRRASPYAELDEGHYQALLQMLAEGLNGRQGVRSAYLHRDAVTRTLRGRRGS
KLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRVETG
RVRVEDAQGQPPTIPFWLGEAPGRSAELSLAVARLQAQLDHLLGATPGNLQPALDWLTGT
LQLNLASAEQLVDYLAPARLAFGALPSQDTLLMERFFDESGGTQLIIHTPFGSRINRAWG
LALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSHSAEQILVQAVLDAP
LFGVRWRWNAGVALALPRYAGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPD
HPLVEQTLDDCLHEAMDSEGWLTLLRRMEAGQIRLISRDLPAPSPLAAEILSARPYTFLD
DAPLEERRTQAVINRRWSDPQATDDLGALDAEAIQSVRDEAWPTPTNLDEMHEALMSLAC
IADSEASAHASWLDWLQTLAEGGRASHVQISAERGLWVALERLTCLQAVYPQAQWQPALT
PLAGFDETWDGDEALVEVLRARLSAFGPLPLKAIAYPLGLSTPQVTQALAQLEQQGYVLR
GRFTPGTGQEEWCERHLLARIHRYTVKRLRREIEPVMLQDFMRFLFDWQHLSSSSQGRGN
AVLPSILGQFEGFPAAASAWDSDLLPARIKDYSPSWLDELCRSGKWVWTRLSAHQKPSAS
ALRSTPVVLLPRSQVALWSSLAGQTALDELSPKTQKVHQALAEHGALFFDELAHEAHLLR
SELEIALQELVGAGLVNADSFAGLRALITPASKRQARSSRRGRGAFVGGMDDAGRWALLR
RSQPAPVEGNRPAPTPPETLEHVAMTLLRRYGVVFWRLLEREADWLPSWRELLRTFHRLE
ARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPTDGSLVAVCGVDPLNLAGTLLPGAK
VPALAGNRLVYRDGLPVAAQIAGKQHLWMELDAQGMAEIRNKLIQHH