Protein Info for Pf6N2E2_4902 in Pseudomonas fluorescens FW300-N2E2

Annotation: Endonuclease/Exonuclease/phosphatase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF03372: Exo_endo_phos" amino acids 50 to 260 (211 residues), 56.6 bits, see alignment E=1.6e-19

Best Hits

Swiss-Prot: 59% identical to YBHP_SHIFL: Uncharacterized protein YbhP (ybhP) from Shigella flexneri

KEGG orthology group: K06896, (no description) (inferred from 98% identity to pba:PSEBR_a5056)

Predicted SEED Role

"Endonuclease/Exonuclease/phosphatase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0U7 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Pf6N2E2_4902 Endonuclease/Exonuclease/phosphatase family protein (Pseudomonas fluorescens FW300-N2E2)
MNRPETSEATHEPTQQQAQVLDRVSRFTVLTVNTHKGFTALNRRFILPELREAVRSVSAD
VVFLQEVHGTHEHHPQRYSNWPSMPQYEFLADSLWPQFAYGRNAVYPAGDHGNALLSKFQ
IIRHDNLDVSISGHESRGMLHSVLRLPGDGQQVHAICVHLGLREGHRVEQLKLLCQRLSE
LPPDAPVIVAGDFNDWRGKASELLEPCGLREVFAEQLGKPARSFPARLPILRLDRIYVRN
LKAHHPKVLSVRPWSHLSDHAPLSVEIEL