Protein Info for Pf6N2E2_4818 in Pseudomonas fluorescens FW300-N2E2

Annotation: Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 7 to 34 (28 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details amino acids 134 to 157 (24 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 257 (177 residues), 64.3 bits, see alignment E=6.2e-22

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 100% identity to pba:PSEBR_a5125)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0N9 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Pf6N2E2_4818 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) (Pseudomonas fluorescens FW300-N2E2)
MSPVERVWFYCLRTLCGLILLFLILPVLVIIPLSFNSGSFLVYPLQGFSLQWYHDFFASA
EWMRALKNSIIVAPAATLLAMVFGTLAAIGLTRGDFPGKALVMALVISPMVVPVVIIGVA
SYLFFAPLGMGNSFFSLIVVHAVLGVPFVIITVSATLQGFNHNLVRAAASLGASPLTAFR
RVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAA
TLLIAFSVILLLTLEWLRGRSEKLRTTQA