Protein Info for Pf6N2E2_4780 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00953270: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 39 to 56 (18 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 82% identity to pba:PSEBR_a5161)

Predicted SEED Role

"FIG00953270: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3J5 at UniProt or InterPro

Protein Sequence (787 amino acids)

>Pf6N2E2_4780 FIG00953270: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
VPAFFVTILPPPLALLAVLFFGLLMGLAARFGFLSAGRVCGRLIVGAVFGLGFSVGRALP
EWWGILAAIASIGVGLACVSAWERRLGLASVSGKGASAWGGSEPQLTPEGEPIRVFNHSE
IAMGGPTYCDYLFPDGVLLQGLGSSSMFSRDGRYFAATVPSRQNWGLVVLDRQQRQVYRC
ADSELWELDAFDLGVLSGRHSPLVDDSVREIRLDELLQTASVTHLVAFADLWLDSDWHPE
QVQHTFERRSADGQHCLRGDIALPATFRDLAQPLEPLVSPRYAISVNGQPSGLLMAADAP
LVWSSDQRAMVCLAQEQTPHADGDQYWLWQLDLGWRALPSPWVKCEAEPSFYWHQLLGLD
ASHVQIGSYLDYPRPGSGRYGYRLDSIHGDTETQVGHDAQGRVQVGEFALTRMTIAMPLD
SQGQRGDSSIETQPMQDGVRARLTWLGDNPDGLGGYRCQIGDWQLPGRWLLDHRVSDCGR
YLALLPFDGATTVATHGVVADMEERQLLQGPAMWVARLLDFRAGRLSLAVVAGRLDQDLE
SSALQRFNIPAPQSDSVPSFFQSDEQSRLFYNTVELQVSDTHLHSVAPWRLVDRPQAANA
DGDFIQPAPDHQDAAWLFGSETEYADSWVRAQAPRLGGHLLTASGCALVDLAPSMIWSTD
SRYLALTCMATDVTEQCGSYRGWQLLLLDVQEHTLRVHPQWLGNRPLFESFDDEQLHVRC
FERDWEAQDDDDPGSVQSFSLDLLLQLPTEQLVCQDGLWFRTSQVHRACAWRALALPAID
YFAHESL