Protein Info for Pf6N2E2_4645 in Pseudomonas fluorescens FW300-N2E2

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 259 to 275 (17 residues), see Phobius details PF00892: EamA" amino acids 146 to 275 (130 residues), 45.7 bits, see alignment E=3.8e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a5279)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZXE7 at UniProt or InterPro

Protein Sequence (277 amino acids)

>Pf6N2E2_4645 Integral membrane protein (Pseudomonas fluorescens FW300-N2E2)
VLATALVLVAALLHAAWNTLIKFSGERLLVVACMDSVALLFVALALGFVALPPLAIWPWI
LASAAFELLYRYLLIQAYRVGDLGLVYPLMRGLSPLVVLALTFIFAGEALTTQQIFGILL
IPFGMLCLLWQGGGGARLPWSMLPVVALIGLCIGCYTFIDGHALRRWSHPLDYLVWVTLL
SAWPFPLLALVGKRPAFMRFWREQWRLGLAVGFCVLFSYALVLWAMQLGSIAEAAALREI
SVILVVLFGMRYLKEPFGLPRLLACGLVLVGMLVMKF