Protein Info for Pf6N2E2_4621 in Pseudomonas fluorescens FW300-N2E2

Annotation: Malonate decarboxylase delta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 99 TIGR03130: malonate decarboxylase acyl carrier protein" amino acids 2 to 95 (94 residues), 114.8 bits, see alignment E=6.5e-38 PF06857: ACP" amino acids 17 to 95 (79 residues), 83.3 bits, see alignment E=6.2e-28

Best Hits

Swiss-Prot: 94% identical to MDCC_PSEPF: Malonate decarboxylase acyl carrier protein (mdcC) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K13931, malonate decarboxylase delta subunit (inferred from 100% identity to pba:PSEBR_c2g110)

Predicted SEED Role

"Malonate decarboxylase delta subunit" in subsystem Malonate decarboxylase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WVM2 at UniProt or InterPro

Protein Sequence (99 amino acids)

>Pf6N2E2_4621 Malonate decarboxylase delta subunit (Pseudomonas fluorescens FW300-N2E2)
METLSFEFPAGQPPRGRALVGCVGSGDLEVLIEPGLAGKLTIQVQTSVNGSEQRWQHLFA
RMFDGQTPPALSIDIHDFGATPGVVRLRLEQGFEEIGHD