Protein Info for Pf6N2E2_4598 in Pseudomonas fluorescens FW300-N2E2

Annotation: COG1872

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 97 TIGR00251: TIGR00251 family protein" amino acids 7 to 87 (81 residues), 72.5 bits, see alignment E=1.3e-24 PF02594: DUF167" amino acids 11 to 82 (72 residues), 89.2 bits, see alignment E=8e-30

Best Hits

Swiss-Prot: 92% identical to Y5322_PSEPF: UPF0235 protein Pfl01_5322 (Pfl01_5322) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K09131, hypothetical protein (inferred from 97% identity to pba:PSEBR_a5324)

Predicted SEED Role

"COG1872"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A084 at UniProt or InterPro

Protein Sequence (97 amino acids)

>Pf6N2E2_4598 COG1872 (Pseudomonas fluorescens FW300-N2E2)
VSYFRWDGDDLILECHLQPAARSDDFAGLHGDRLKIRLTAPPVEGKANAYLMAFLAKAFG
VSKSQVSLISGELNRQKRVRIHAPKKLPELPGLVRPT