Protein Info for Pf6N2E2_4559 in Pseudomonas fluorescens FW300-N2E2

Annotation: probable integral membrane protein NMA1898

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 transmembrane" amino acids 329 to 349 (21 residues), see Phobius details PF01926: MMR_HSR1" amino acids 6 to 151 (146 residues), 52.4 bits, see alignment E=5.6e-18 PF11981: DUF3482" amino acids 164 to 450 (287 residues), 383.1 bits, see alignment E=1e-118

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a5360)

Predicted SEED Role

"probable integral membrane protein NMA1898"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A205 at UniProt or InterPro

Protein Sequence (453 amino acids)

>Pf6N2E2_4559 probable integral membrane protein NMA1898 (Pseudomonas fluorescens FW300-N2E2)
MKPLKLAVVGHTNVGKTSLLRTLTRDVGFGEVSHRPSTTRHVEGARLSVDGEALLELYDT
PGLEDAIALLDYLERLERPGERLDGPARLARFLEGSEARQRFEQEAKVLRQLLASDAGLY
VIDAREPVLAKYRDELEVLASCGKPLLPVLNFVSSAHHREPDWREALARLGLHALVRFDS
VAPPEDGERRLYESLALLLESARGQLERLVADQQVQRLARQQSAARLIAELLIDCAACRR
SVASDAELEREAISELRKAVRQREQRCVEALLKLYAFRPQDAAASDLPLLDGRWGDDLFN
PETLKQLGVRVGGGIAAGAAAGAGVDLLVGGLTLGAAALAGAIVGGTLQTARSYGNRLMG
KLKGQRELTVDDSVLRLLALRQRQLLQALDQRGHAAMDSIRIATPQDKTWREGKLPDALN
KARAHPQWSSLNPQPRLSQAERQELIEQLAEQL