Protein Info for Pf6N2E2_455 in Pseudomonas fluorescens FW300-N2E2

Annotation: Permease of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 133 to 151 (19 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details amino acids 285 to 302 (18 residues), see Phobius details PF00892: EamA" amino acids 19 to 149 (131 residues), 93.9 bits, see alignment E=1e-30 amino acids 165 to 302 (138 residues), 96 bits, see alignment E=2.5e-31 PF06027: SLC35F" amino acids 97 to 301 (205 residues), 25.1 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a3407)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZT19 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Pf6N2E2_455 Permease of the drug/metabolite transporter (DMT) superfamily (Pseudomonas fluorescens FW300-N2E2)
MKTLEQTLPTPSDLPVYLKLAMVTMIWGGTFVAGRILSDALAPMFAASLRFLLASIALLA
FLALAGIPLARPSVKQGLHLAALGFFGIFFYNLCFFYGLQYINASRASLIVALNPAVIGL
ASWWLFKERLSRLKVAGIVLCIGGAGLVIVSRDPSLLQGAAQGWIGDLLIFGCVLGWGIY
SLFSRRLNDSLGPLQTVTWSILLGTLMLWLACAAAGEIRVEALRALDLEQWLSLLYLGVL
GSALAYIAWYDGIRRIGATRSGVFIALNPLTAVLLGALLLDERLTALMCVGGGVILVGIF
LCNKPLARSKEKAI