Protein Info for Pf6N2E2_4501 in Pseudomonas fluorescens FW300-N2E2

Annotation: Alkyl hydroperoxide reductase subunit C-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00578: AhpC-TSA" amino acids 49 to 177 (129 residues), 109.9 bits, see alignment E=1.2e-35 PF08534: Redoxin" amino acids 49 to 186 (138 residues), 47.2 bits, see alignment E=3.2e-16 PF10417: 1-cysPrx_C" amino acids 199 to 239 (41 residues), 39.3 bits, see alignment 7.2e-14

Best Hits

Swiss-Prot: 59% identical to PRDXL_DICDI: 1-Cys peroxiredoxin (DDB_G0282517) from Dictyostelium discoideum

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a5414)

Predicted SEED Role

"Alkyl hydroperoxide reductase subunit C-like protein" in subsystem Oxidative stress or Rubrerythrin or Thioredoxin-disulfide reductase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0D0PJP9 at UniProt or InterPro

Protein Sequence (255 amino acids)

>Pf6N2E2_4501 Alkyl hydroperoxide reductase subunit C-like protein (Pseudomonas fluorescens FW300-N2E2)
MRQGASEQFFIFTNDLNKWVFILFKAMKTGAQLVPQQPSRSPTMSLRLGDIAPDFEQDSS
AGKIRFHEWLGDSWGVLFSHPADFTPVCTTELGLTAKLKDEFAQRGVKAIALSVDPVDSH
HKWIEDINETQNAVVNFPILADADRKVSDLYDLIHPNASDTLTVRSLFVIDPNKKIRLTI
TYPASTGRNFNEILRVIDSLQLTDNYKVATPANWQDGDEVVIVPSLKDEEELKQRFPKGY
RAVKPYLRLTPQPNR