Protein Info for Pf6N2E2_4476 in Pseudomonas fluorescens FW300-N2E2

Annotation: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 PF01812: 5-FTHF_cyc-lig" amino acids 10 to 190 (181 residues), 141.8 bits, see alignment E=1.2e-45 TIGR02727: 5-formyltetrahydrofolate cyclo-ligase" amino acids 11 to 192 (182 residues), 151.2 bits, see alignment E=1.5e-48

Best Hits

KEGG orthology group: K01934, 5-formyltetrahydrofolate cyclo-ligase [EC: 6.3.3.2] (inferred from 97% identity to pba:PSEBR_a5436)

Predicted SEED Role

"5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)" in subsystem Folate Biosynthesis or One-carbon metabolism by tetrahydropterines or Serine-glyoxylate cycle (EC 6.3.3.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.3.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZKS3 at UniProt or InterPro

Protein Sequence (201 amino acids)

>Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) (Pseudomonas fluorescens FW300-N2E2)
MTEPALLPRPQLRRLLRQARRALTPAQQRQAAHGLFKQLAQHPLFRRAQHIALYLPNDGE
IDPRLLLREAQRRGKATYLPVLSPWPQTKMVFQRIHPGEKMQPNRFRIPEPRKNIARQRK
VWTLDLVLLPLVGFDDAGGRLGMGGGFYDRSLAYLARRKQWRKPTLLGLAHECQKVERLA
QASWDVPLQGTVSDRHWYIAG