Protein Info for Pf6N2E2_4384 in Pseudomonas fluorescens FW300-N2E2

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 263 to 283 (21 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details PF07690: MFS_1" amino acids 11 to 241 (231 residues), 57.8 bits, see alignment E=4.8e-20 amino acids 232 to 368 (137 residues), 46.9 bits, see alignment E=9.7e-17

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a5515)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZKH7 at UniProt or InterPro

Protein Sequence (380 amino acids)

>Pf6N2E2_4384 Major facilitator family transporter (Pseudomonas fluorescens FW300-N2E2)
MRWATYFAVLASVLSVGLALGVSMPLVSLRLEGWGYGSFAIGVMAAMPAVGVLLGAKVSS
RLAARFGTAALMRLCLWGGAVSIGLLALLPSYPVWLLLRLLIGVVLTLVFILGESWINQL
VIEKWRGRLVALYGSSYALSQLSGPLLLGALGTAHDYGFWVGVGLLLVAPLLLLGRSGAP
SSEAGSVTFGDLWTFCRGLPAIAWAVSLFAAFEAMILTLLPVYCLRQGFTADVALAMVST
VVVGDALLQLPIGALADRVSRRALLTGCAVVLTLSSLAVPLLIDTLLIWPLWVLFGASAG
GLFTLSLILIGERYRDDALVRANAHIAQLWGLGCLIGPLVAGAGSQWISGHALPLFMAAG
AFGLVILLLRQGAFGATQAA