Protein Info for Pf6N2E2_4348 in Pseudomonas fluorescens FW300-N2E2

Annotation: Autotransporter adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 67 to 86 (20 residues), see Phobius details amino acids 97 to 113 (17 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 67 to 113 (47 residues), 37.9 bits, see alignment 1.2e-13 PF13488: Gly-zipper_Omp" amino acids 70 to 118 (49 residues), 31.2 bits, see alignment 1.6e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a5545)

Predicted SEED Role

"Autotransporter adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3L7 at UniProt or InterPro

Protein Sequence (313 amino acids)

>Pf6N2E2_4348 Autotransporter adhesin (Pseudomonas fluorescens FW300-N2E2)
MLFSRKPFASVSKRHLLMVAVGFSTVLTGCATSPTSKVASSTKVEYYPNCYEPVQHLRST
EGNMTKSVVTGAAVGAVGGALLGVLTADKEDRGRNAAIGAAGGALAGGAAGYYTERQKQI
ADDNQRIASYAADVNKSVSDIDRSTAYAKTSQQCYQNAFSKLVADRKAKTVNDTEGRKRL
AEIVAGLKESNDLIVAVNGKASEDLNNYTQAYEKDLQQVGVQRTDVVTVATADTTPVVAQ
TTNKKKNKIVQPAKKKDLPVVPKEAVTTEKTLQTAKAKQDESKQVASAGTTQVNSMCKNP
DLGDWAPVPCPNV