Protein Info for Pf6N2E2_4334 in Pseudomonas fluorescens FW300-N2E2

Annotation: Uncharacterized protein ImpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 21 to 495 (475 residues), 725.5 bits, see alignment E=1.5e-222 PF05943: VipB" amino acids 71 to 373 (303 residues), 453.2 bits, see alignment E=3.7e-140 PF18945: VipB_2" amino acids 383 to 494 (112 residues), 147.2 bits, see alignment E=2.1e-47

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 100% identity to pba:PSEBR_a5559)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3R0 at UniProt or InterPro

Protein Sequence (500 amino acids)

>Pf6N2E2_4334 Uncharacterized protein ImpC (Pseudomonas fluorescens FW300-N2E2)
MIMTDNTAREGVQNLGATEETSEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDL
VSNDAIKSIESIIAAIDAKLTAQVNQVIHHPDFQQLESAWRGLHYLVNNTETDEQLKIRV
LNISKTDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVEL
LGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSR
YIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFG
WCSRIRGVESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKN
TDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEK
DEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQ
LEGLTVSLRLVSKLPSAKGA