Protein Info for Pf6N2E2_4284 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1769 transmembrane" amino acids 899 to 919 (21 residues), see Phobius details PF20178: DUF6543" amino acids 555 to 836 (282 residues), 84.1 bits, see alignment E=6.3e-28

Best Hits

KEGG orthology group: None (inferred from 69% identity to pba:PSEBR_a5587)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A3L8 at UniProt or InterPro

Protein Sequence (1769 amino acids)

>Pf6N2E2_4284 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
LKPISLLANGVRFQPHVFADQWLGQWGLTGDAQVNVTYQEVETIDSAAVTQSTSVPLRDA
VTQGFLIAHQSRGSSSGHSPREGWIYPHISHMSLDFTALRVNGKALAPDVLQQLRAGIAP
GYQGIGQPVMTEVDAQGNLLGAREKEQARQLALLDTNQVKLARLFAALPTFDSVLKSLLA
SRIKAKIPQKKFRGSLLQDIDPDHWYVNHFTVDATGSRSLTSSQRFSDVMLDCLVTDTPP
TYAVGSVGFFSRPDSVEEADSVFASPLDTKTAATLEAVFYIAQPTGNEELKQQWRDDLTR
FRNSSGADVLDTPTPASTTHAALAHLLSRRFLHFFDLYRIDRDPGTQSSPDARTRQAEED
RLLDLITTHPSMADRNRLLRAPIPHVYAVMLDMGTAAPKKWPAAMVIKRTDQPYLFLYSL
EGGIKRFSSVQDLINKVSPIYEGQKRAIRDIASELSGSVFEVAADDLLQIQSTALERYLN
APGNETVALTAFALNVEDALDLPMLSLAGPLAVRQEILVENSRGDFYKTATRTEKSTYRS
LETQVLEAAYQLGSSDIQTLLQFTRQKVKEYLQKTVHPGIDPDPDQSLVTFFYGQRANPR
QSRSTSLTQLLLDNLRPAQYPNGMREVLSVYLVDEDGQRIRNPANGYFITLTGRELARMV
TSIDAGGSYQAMLKEEMNKPDYKKTWQTAYLANLKFKGYEASLKGDEVFKASLIDKAFNP
PKPAKKLALWLDAVLRSPSAARRAPVMGRAVHVYGLLLGGSMAAGGQQARQSNATSIDGA
LIFSDQAGPDIKGTVGVYFPDAPEGEDFHEFADLSDGIAQLLPREDWQEYFRARISTSNP
VEIKRTLGQQGGRPLIRGALITGDLFEALHRAHVYFHSAHADHRSNSNRDVRHQTYGRFG
QMVIEIVLELAGLFLAPGIQMLKSAIKTGLLIFRTGAIPLNLRTLALVHTIANHGGWRLS
AGVAVPTRSQSFFRAVTARQSPEEALTGLPLDSAIYGRYAVADTSVIQGLAADARGFYRA
TVSDVATGRVTARPVYVRQPDGTVFRVHDATKLNATDAILVDPITGLSLRSSGVMRSTVA
RTSDGEWRAVGFGRGGGKRPGDLNPQPGPSKPKKAAISSTALSSLVRTPGRWNNQLMDLV
PSIMTRLRSWPQNRSLLILNEQTPEHVWSVRFTPGQDETIYPASNHPDRTDTDVVLSRPT
QDHYSLVLGEEVVEIPADGDCFFNAVTRGLNEGQAQETFSMQGLRNEVADYIDQHPQIEQ
YVAPPPTGTQEALFENASSLDNLLGSAAVLDLTRIVYGAPNPHRLFQPTLRYLELHANSS
VRTAITANPASRLPTEILQQVGRLLSQRPPAKLVASVYAPYSGEERQTMQQLFEDLLVGP
VEPELIQKLLDDQFLLITPDVAHILLEYGVTARQLVNHHPNNSSAYILYDEALHGHLDED
QIEALLDGAYLVNSDDLDDAKSLLVADAGKYVDDTSELFDHFIYTDRADRTVNLFKTALG
RFPVLLRRANFLFRSPIIAHNLGGLLRVGEVARWLRNPALSDRRFQLLAEYASTRYSELQ
RTESIDVDWMQLFDDRNLHNIVMHQEELADFLEFLGGAWGNIMDNDIPAVAKLFSFAGQP
PSNARVALLFETPNLWSSLQKLRKDYASQIWADLIGPHFSDATIRKTLAEPRALNSELHL
ALALRGSLAPEEFRANQIIQRLLSIGQRRAQQYLYNFDFPTDRLGHSRLDFAVYVESHLA
IPDWAWQYARRGVTPESLKKIGEVKPKPE