Protein Info for Pf6N2E2_428 in Pseudomonas fluorescens FW300-N2E2

Annotation: Protease subunit of ATP-dependent Clp proteases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF00574: CLP_protease" amino acids 3 to 168 (166 residues), 45 bits, see alignment E=5.8e-16

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3432)

Predicted SEED Role

"Protease subunit of ATP-dependent Clp proteases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZSV2 at UniProt or InterPro

Protein Sequence (187 amino acids)

>Pf6N2E2_428 Protease subunit of ATP-dependent Clp proteases (Pseudomonas fluorescens FW300-N2E2)
MSEHIVHFHCQIDQGTTERFRDNCLEAIEKGADSLMLNLSTVGGSTNFGFTLYTFIKSLP
IPVRAVNAGNIESMGIVMYLAASDRTTTPHSRFLIHPMNWYFGQKSVDHSRLREYLSSLD
NDVARYVEIYVKETAGAATQLDIFKCLCAEERVIPAENSLAFGIAHRVEQVVFPADAKHW
KVSGGED