Protein Info for Pf6N2E2_4261 in Pseudomonas fluorescens FW300-N2E2

Annotation: Zinc ABC transporter, ATP-binding protein ZnuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 PF00005: ABC_tran" amino acids 22 to 154 (133 residues), 77.7 bits, see alignment E=1.4e-25 PF13304: AAA_21" amino acids 29 to 51 (23 residues), 27.6 bits, see alignment (E = 2.9e-10)

Best Hits

KEGG orthology group: K02074, zinc/manganese transport system ATP-binding protein (inferred from 92% identity to pba:PSEBR_a5609)

Predicted SEED Role

"Zinc ABC transporter, ATP-binding protein ZnuC" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZK0 at UniProt or InterPro

Protein Sequence (222 amino acids)

>Pf6N2E2_4261 Zinc ABC transporter, ATP-binding protein ZnuC (Pseudomonas fluorescens FW300-N2E2)
MIDCQALRWGAPGQPLTPPLAMERPAGSLTAIIGANGSGKSSLLKVLAGLQKPLAGKVAL
NVPRRGGVSFMPQQQHLDRQFPINLQDLVAAGSWGNRHTPAMRRQLLQTVLDDWALNGLE
QRPLMALSGGELQRALLARLSLAEAPLLLLDEPHAALDEQGQALLWKHIHRWHTAGRTIV
VVCHDLAAVRQHVPHTLLIKNTGCVLGRSVDLIAQQPHAWVA