Protein Info for Pf6N2E2_4252 in Pseudomonas fluorescens FW300-N2E2

Annotation: Membrane protease subunits, stomatin/prohibitin homologs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 653 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 58 to 82 (25 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 156 to 180 (25 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 226 to 250 (25 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details PF01145: Band_7" amino acids 332 to 544 (213 residues), 76 bits, see alignment E=2e-25

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a5618)

Predicted SEED Role

"Membrane protease subunits, stomatin/prohibitin homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZE9 at UniProt or InterPro

Protein Sequence (653 amino acids)

>Pf6N2E2_4252 Membrane protease subunits, stomatin/prohibitin homologs (Pseudomonas fluorescens FW300-N2E2)
MQVDLDVEGAQVAEWPRFQQASFQGRRLKQIAFALGSVAGLGLVLAFFIGVFSPQSLWPV
LLVSQGAGLLVLVAGLQSAWWVTQWRSRALLPAVDNLPVENEPVDNLGWYERLLERIGAR
GVGLLKQIGAPALWLAGWSVLVLLGLEQAWNLQLPAAALGVSASVGAVLSLLLAFGLLVF
ERQLAQQSPVEWPEAPPLAQLTRVAIIVLVLGALCLLFVAETSIWPLRLAVLMGLLPGVV
AAEFLLRAVLSLFIPRRDALEPTLLGRSVIADLLRWPPQPLLALQHELHNRFGIDLRQIW
AFSYMRRAFLPVLALVVLVGWLLTGVHEVPLQGRGIYERFGKPVEVFGPGLHVALPWPWG
RVLNVENGVVHELATSVAESRAVVEAEPAEGPAPAIANRLWDASHVNDKSQVIASRRADQ
QSFQIVNMDVRFVYRIGLTDAAALAATYNSADVPTLIRSTASRILVHEFASRTLDGLLGA
DRVSLADEIGRAVQADLQSLDSGVEILATVVEAIHPPAGAANAYHGVQAAQIGAQALIAR
ERGAAAEQTNQAQLQASVAHDQATATAREINATAQAADLRFSADRKAYATAGHAFVLEDY
LGQLSQGLANARLLILDHRLGGSGNAPTIDLRTFTLPADPASPRNPVPPGAAH