Protein Info for Pf6N2E2_42 in Pseudomonas fluorescens FW300-N2E2

Annotation: Sensor protein PhoQ (EC 2.7.13.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details PF02518: HATPase_c" amino acids 333 to 436 (104 residues), 69 bits, see alignment E=7.3e-23 PF14501: HATPase_c_5" amino acids 334 to 421 (88 residues), 24.9 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a3889)

Predicted SEED Role

"Sensor protein PhoQ (EC 2.7.13.3)" in subsystem Lipid A modifications (EC 2.7.13.3)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YHI6 at UniProt or InterPro

Protein Sequence (437 amino acids)

>Pf6N2E2_42 Sensor protein PhoQ (EC 2.7.13.3) (Pseudomonas fluorescens FW300-N2E2)
VRSIQRRLSLGLIGVMVVVGLVLAQTSLWLFELGLQRYLEAGLRNDSENLLVALVRGPQG
LQLDERRLSPAYQRPFSGHYFRIDFADVHWRSRSLWDQELPRLDHPGLHSNLQLGPEGQK
LLVLRTDYRRLGQAISISVAQDYTPVRDSFRRMQQIGLGLGLAGLLLILLLQRITVRRAL
RPLDRAREQIAQLQRGQRSQLDEQVPRELEPLVAQINHLLAHTEDSLKRSRNALGNLGHA
LKTPLAVLQSLASNEKLDPYPELRKLLLDQLEQVRQRLNRELNRARLSGDALPGAHLDCD
AELPGLLATLNMIHGEHLHLSYAAPPGLHLPWDREDLLELLGNLLDNACKWADAEVRLTM
TETADGFSLAVEDDGPGIPRDRRDQVFSRGTRLDEQTDGHGLGLGIVRDIVDTWGGLLAL
DDSEWGGLKVVIELPKR